Tim,
1) Scenario maps can't be used for ladder. So only your non-scenario version of the map is available for ladder play. These are the ones players mostly care about as I don't know how many play your map in scenario mode.
2) I just looked at the FFA settings. Apparently you can't set 4 player FFA. So you'll have to make a 3rd version of the map and remove 4 sides for FFA to make a 4 player FFA fixed start spot. Hopefully version 0.9 will allow setting FFA's in the same manner as team games. I do believe SnotlinG changed the code recently to space players apart in FFA games with fewer than max players. That probably means you'd get Cyan/Black/Orange/Green as the 4 spots.
3) I looked at your 2v2 setting for standard. You left all the other 4 sides as Random Team. This means that a player *may* be assigned to them. I made this mistake on Bullrun. You need to set the other 4 sides to 'not used' so that players are forced into the 4 colors you want.
4) Your 2v2 team setting of Cyan/Red Black/Green will definitely result in early flights between Black/Red while the other 2 will take longer. Not that it's wrong, just saying that's how it's going to play out vs the ones LPhillips and I suggested.
5) I would set the 1v1 to Black vs Green otherwise if it's left Random as it is now you can get Cyan vs Blue or White vs Orange type imbalance. You should also set 3v3, 4v4 and 2v2v2 setups as well to prevent the same randomness from occurring. This is important for ladder play. Don't forget to set unused spots to 'Unused' rather than random team.
6) In the scenario setup I see that 4v4 has everyone on the same team. I think that means it's broken as there will be no team 2. I'd look closely at all your scenario setups as many don't look right. This doesn't matter for ladder but might mess up the scenarios entirely.
7) Production/Armies in the Capitol ONLY matter for scenario. They won't be used in Standard (ladder play). This is why it's important to set the cities BY the capitols to have units players need (like a Dwarf in the city to the right of the Green Capitol so they can go right down that mountain range really fast and an Elf in one of the cities next to the Red Capitol).
KGB